I'd actually recommend small minnows if you can find them (catch them if you live in an area where you can find them, but be sure to quarantine them first), white clouds from the pet store, or mountain minnows (again, if you can find them, some pet stores carry them). All of these will do fine in shallow water, no lower than 2 inches. The minnows will like fairly quickly moving water, but shouldn't require it. FBTs prefer almost standing water (I use a dripping filter system that keeps the water moving and filtering, without agitating it so that the frogs don't notice it's moving so much), so you don't want it moving too quickly for them.
With guppies, you'd have to go with common guppies to use shallow water. I currently have a couple of common guppy males in water that gets as shallow as three inches, and I have kept several adults in water that was between 3 and four inches deep and occupied about half of a ten gallon. They did quite well and bred some, they were food for my newt from time to time so they didn't have a huge population explosion.
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